Kesmir, C.: search on Z-Library

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1

The evolution of natural killer cell receptors

Carrillo-Bustamante, Paola, Keşmir, Can, de Boer, Rob J.

Journal:

Year:

2016

Language:

english

File:

PDF, 541 KB

english, 2016

2

Exploratory Study of Predicted Indirectly ReCognizable HLA Epitopes in Mismatched Hematopoietic Cell Transplantations

Geneugelijk, Kirsten, Thus, Kirsten A., van Deutekom, Hanneke W. M., Calis, Jorg J. A., Borst, Eric, Keşmir, Can, Oudshoorn, Machteld, van der Holt, Bronno, Meijer, Ellen, Zeerleder, Sacha, de Groot,

Journal:

Frontiers in Immunology

Year:

2019

Language:

english

File:

PDF, 723 KB

english, 2019

3

From image processing to classification: II. Classification of electrophoretic patterns using self-organizing feature maps and feed-forward neural networks

Can Keşmir, Dr. Ib Søndergaard, Kirsten Jensen

Journal:

ELECTROPHORESIS

Year:

1995

Language:

english

File:

PDF, 654 KB

english, 1995

4

From image processing to classification: IV. Classification of electrophoretic patterns by neural networks and statistical methods enable quality assessment of wheat varieties for breadmaking

Kristen Jensen, Can Kesmir, Dr. Ib Søndergaard

Journal:

ELECTROPHORESIS

Year:

1996

Language:

english

File:

PDF, 562 KB

english, 1996

5

MR1-restricted MAIT cells display ligand discrimination and pathogen selectivity through distinct T cell receptor usage

Gold, M. C., McLaren, J. E., Reistetter, J. A., Smyk-Pearson, S., Ladell, K., Swarbrick, G. M., Yu, Y. Y. L., Hansen, T. H., Lund, O., Nielsen, M., Gerritsen, B., Kesmir, C., Miles, J. J., Lewinsohn,

Journal:

Journal of Experimental Medicine

Year:

2014

Language:

english

File:

PDF, 6.80 MB

english, 2014

6

Complex T-Cell Receptor Repertoire Dynamics Underlie the CD8 + T-Cell Response to HIV-1

Costa, Ana I., Koning, Dan, Ladell, Kristin, McLaren, James E., Grady, Bart P. X., Schellens, Ingrid M. M., van Ham, Petra, Nijhuis, Monique, Borghans, José A. M., Keşmir, Can, Price, David A., van Ba

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 1.63 MB

english, 2015

7

Complementarity of Binding Motifs is a General Property of HLA-A and HLA-B Molecules and Does Not Seem to Effect HLA Haplotype Composition

Rao, Xiangyu, De Boer, Rob J., van Baarle, Debbie, Maiers, Martin, Kesmir, Can

Journal:

Frontiers in Immunology

Year:

2013

Language:

english

File:

PDF, 454 KB

english, 2013

8

Measles Virus Epitope Presentation by HLA: Novel Insights into Epitope Selection, Dominance, and Microvariation

Schellens, Ingrid M., Meiring, Hugo D., Hoof, Ilka, Spijkers, Sanne N., Poelen, Martien C. M., van Gaans-van den Brink, Jacqueline A. M., Costa, Ana I., Vennema, Harry, Keşmir, Can, van Baarle, Debbie

Journal:

Frontiers in Immunology

Year:

2015

Language:

english

File:

PDF, 365 KB

english, 2015

9

HLA class I allele promiscuity revisited

Xiangyu Rao, Ilka Hoof, Ana Isabel C. A. Fontaine Costa, Debbie van Baarle, Can Keşmir

Journal:

Year:

2011

Language:

english

File:

PDF, 641 KB

english, 2011

10

A Mathematical Model of Protein Degradation by the Proteasome

Luciani, Fabio, Keşmir, Can, Mishto, Michele, Or-Guil, Michal, de Boer, Rob J.

Journal:

Biophysical Journal

Year:

2005

Language:

english

File:

PDF, 193 KB

english, 2005

11

Heterozygote advantage fails to explain the high degree of polymorphism of the MHC

Rob J. Boer, José A. M. Borghans, Michiel Boven, Can Keşmir, Franz J. Weissing

Journal:

Year:

2004

Language:

english

File:

PDF, 237 KB

english, 2004

12

Prediction of Human Protein Function from Post-translational Modifications and Localization Features

L.J. Jensen, R. Gupta, N. Blom, D. Devos, J. Tamames, C. Kesmir, H. Nielsen, H.H. Stærfeldt, K. Rapacki, C. Workman, C.A.F. Andersen, S. Knudsen, A. Krogh, A. Valencia, S. Brunak

Journal:

Journal of Molecular Biology

Year:

2002

Language:

english

File:

PDF, 431 KB

english, 2002

13

A Universal Approach to Identify Permissible HLA-Mismatches in HSCT: Predicted Indirectly Recognizable HLA Epitopes

Thus, Kirsten A., Furst, Daniel, van Deutekom, Hanneke, Calis, Jorg, Borst, Eric, Kesmir, Can, Kuball, Jurgen, Mytilineos, Joannis, Spierings, Eric

Journal:

Biology of Blood and Marrow Transplantation

Year:

2014

Language:

english

File:

PDF, 249 KB

english, 2014

14

Proteome Sampling by the HLA Class I Antigen Processing Pathway

Hoof, Ilka, van Baarle, Debbie, Hildebrand, William H., Keşmir, Can, Peters, Bjoern

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 375 KB

english, 2012

15

Modeling the adaptive immune system: predictions and simulations

Lundegaard, C., Lund, O., Kesmir, C., Brunak, S., Nielsen, M.

Journal:

Year:

2007

Language:

english

File:

PDF, 177 KB

english, 2007

16

Identification of wheat varieties using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry and an artificial neural network

Helle Aagaard Bloch, Can Keşmir, Marianne Petersen, Susanne Jacobsen, Ib Søndergaard

Journal:

Rapid Communications in Mass Spectrometry

Year:

1999

Language:

english

File:

PDF, 55 KB

english, 1999

17

Predicted indirectly recognizable HLA epitopes presented by HLA-DR correlate with the de novo development of donor-specific HLA IgG antibodies after kidney transplantation

Otten, Henny G., Calis, Jorg J.A., Keşmir, Can, van Zuilen, Arjan D., Spierings, Eric

Journal:

Human Immunology

Year:

2013

Language:

english

File:

PDF, 601 KB

english, 2013

18

HIV-1 evolution in patients undergoing immunotherapy with Tat, Rev, and Nef expressing dendritic cells followed by treatment interruption

de Goede, Anna L., van Deutekom, Hanneke W.M., Vrancken, Bram, Schutten, Martin, Allard, Sabine D., van Baalen, Carel A., Osterhaus, Albert D.M.E., Thielemans, Kris, Aerts, Joeri L., Keşmir, Can, Leme

Journal:

Year:

2013

Language:

english

File:

PDF, 670 KB

english, 2013

19

Quantifying the Protection of Activating and Inhibiting NK Cell Receptors during Infection with a CMV-Like Virus

Carrillo-Bustamante, Paola, Keşmir, Can, de Boer, Rob J.

Journal:

Frontiers in Immunology

Year:

2014

Language:

english

File:

PDF, 1.37 MB

english, 2014

20

HLA Preferences for Conserved Epitopes: A Potential Mechanism for Hepatitis C Clearance

Rao, Xiangyu, Hoof, Ilka, van Baarle, Debbie, Keşmir, Can, Textor, Johannes

Journal:

Frontiers in Immunology

Year:

2015

Language:

english

File:

PDF, 533 KB

english, 2015

21

MHC class I molecules exploit the low G+C content of pathogen genomes for enhanced presentation

Jorg J. A. Calis, Gabino F. Sanchez-Perez, Can Keşmir

Journal:

European Journal of Immunology

Year:

2010

Language:

english

File:

PDF, 438 KB

english, 2010

22

Loss of HIV-1-derived cytotoxic T lymphocyte epitopes restricted by protective HLA-B alleles during the HIV-1 epidemic

Schellens, Ingrid M.M., Navis, Marjon, van Deutekom, Hanneke W.M., Boeser-Nunnink, Brigitte, Berkhout, Ben, Kootstra, Neeltje, Miedema, Frank, Keşmir, Can, Schuitemaker, Hanneke, van Baarle, Debbie, B

Journal:

Year:

2011

Language:

english

File:

PDF, 398 KB

english, 2011

23

HLA Alleles Associated with Slow Progression to AIDS Truly Prefer to Present HIV-1 p24

Borghans, José A. M., Mølgaard, Anne, de Boer, Rob J., Keşmir, Can, Altfeld, Marcus

Journal:

Year:

2007

Language:

english

File:

PDF, 253 KB

english, 2007

24

How does Cytopathicity Affect the Production of Neutralizing Antibody?

Keşmir, De Boer

Journal:

Scandinavian Journal of Immunology

Year:

1998

Language:

english

File:

PDF, 60 KB

english, 1998

25

Identification of barley and rye varieties using matrix-assisted laser desorption/ionisation time-of-flight mass spectrometry with neural networks

Helle Aagaard Bloch, Marianne Petersen, Maria Maddalena Sperotto, Can Keşmir, Louise Radzikowski, Susanne Jacobsen, Ib Søndergaard

Journal:

Rapid Communications in Mass Spectrometry

Year:

2001

Language:

english

File:

PDF, 166 KB

english, 2001

26

The role of the proteasome in generating cytotoxic T-cell epitopes: insights obtained from improved predictions of proteasomal cleavage

Morten Nielsen, Claus Lundegaard, Ole Lund, Can Keşmir

Journal:

Year:

2005

Language:

english

File:

PDF, 237 KB

english, 2005

27

Role of peptide processing predictions in T cell epitope identification: contribution of different prediction programs

Calis, Jorg J. A., Reinink, Peter, Keller, Christin, Kloetzel, Peter M., Keşmir, Can

Journal:

Year:

2015

Language:

english

File:

PDF, 1.90 MB

english, 2015

28

Estimating the Fitness Cost of Escape from HLA Presentation in HIV-1 Protease and Reverse Transcriptase

Mostowy, Rafal, Kouyos, Roger D., Hoof, Ilka, Hinkley, Trevor, Haddad, Mojgan, Whitcomb, Jeannette M., Petropoulos, Christos J., Keşmir, Can, Bonhoeffer, Sebastian, Peters, Bjoern

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 666 KB

english, 2012

29

Identifying Permissible HLA-Mismatches in Unrelated-Donor Hematopoietic Stem-Cell Transplantation Using Predicted Indirectly Recognizable HLA Epitopes

Thus, Kirsten A., Geneugelijk, Kirsten, van Deutekom, Hanneke, Calis, Jorg, Borst, Eric, Kesmir, Can, Oudshoorn, Machteld, van der Holt, Bronno, Meijer, Ellen, Zeerleder, Sacha, de Groot, Marco R., vo

Journal:

Biology of Blood and Marrow Transplantation

Year:

2017

Language:

english

File:

PDF, 464 KB

english, 2017

30

Immune biomarkers for predicting response to adoptive cell transfer as cancer treatment

van Belzen, Ianthe A. E. M., Kesmir, Can

Journal:

Year:

2018

Language:

english

File:

PDF, 793 KB

english, 2018

31

Clustering Patterns of Cytotoxic T-Lymphocyte Epitopes in Human Immunodeficiency Virus Type 1 (HIV-1) Proteins Reveal Imprints of Immune Evasion on HIV-1 Global Variation

Yusim, K., Kesmir, C., Gaschen, B., Addo, M. M., Altfeld, M., Brunak, S., Chigaev, A., Detours, V., Korber, B. T.

Journal:

Journal of Virology

Year:

2002

Language:

english

File:

PDF, 1.82 MB

english, 2002

32

Degenerate T-cell Recognition of Peptides on MHC Molecules Creates Large Holes in the T-cell Repertoire

Calis, Jorg J. A., de Boer, Rob J., Keşmir, Can, Peters, Bjoern

Journal:

PLoS Computational Biology

Year:

2012

Language:

english

File:

PDF, 497 KB

english, 2012

33

Predicted Indirectly Recognizable HLA Epitopes Presented by HLA-DRB1 Are Related to HLA Antibody Formation During Pregnancy

Geneugelijk, K., Hönger, G., van Deutekom, H. W. M., Thus, K. A., Keşmir, C., Hösli, I., Schaub, S., Spierings, E.

Journal:

American Journal of Transplantation

Year:

2015

Language:

english

File:

PDF, 260 KB

english, 2015

34

Revealing factors determining immunodominant responses against dominant epitopes

Ritmahan, Wannisa, Kesmir, Can, Vroomans, Renske M.A.

Journal:

Year:

2019

File:

PDF, 1.53 MB

2019

35

Immunogenetics special issue 2020: nomenclature, databases, and bioinformatics in immunogenetics

Kesmir, Can, Bontrop, Ronald

Journal:

Year:

2019

File:

PDF, 150 KB

2019

36

An unanticipated lack of consensus cytotoxic T lymphocyte epitopes in HIV-1 databases: the contribution of prediction programs

Schellens, Ingrid MM, Keşmir, Can, Miedema, Frank, van Baarle, Debbie, Borghans, José AM

Journal:

Year:

2008

Language:

english

File:

PDF, 130 KB

english, 2008

37

Bioinformatic analysis of functional differences between the immunoproteasome and the constitutive proteasome

Can Kesmir, Vera Noort, RobJ. Boer, Paulien Hogeweg

Journal:

Year:

2003

Language:

english

File:

PDF, 488 KB

english, 2003

38

A spatial model of germinal center reactions: cellular adhesion based sorting of B cells results in efficient affinity maturation

Can Keşmir, Rob J De Boer

Journal:

Journal of Theoretical Biology

Year:

2003

Language:

english

File:

PDF, 476 KB

english, 2003

39

Modelling the Human Immune System by Combining Bioinformatics and Systems Biology Approaches

Nicolas Rapin, Can Kesmir, Sune Frankild, Morten Nielsen, Claus Lundegaard, Søren Brunak, Ole Lund

Journal:

Journal of Biological Physics

Year:

2006

Language:

english

File:

PDF, 441 KB

english, 2006

40

The distribution of CTL epitopes in HIV-1 appears to be random, and similar to that of other proteomes

Boris V Schmid, Can Keşmir, Rob J de Boer

Journal:

BMC Evolutionary Biology

Year:

2009

Language:

english

File:

PDF, 2.02 MB

english, 2009

41

A Comparative Analysis of Viral Peptides Presented by Contemporary Human and Chimpanzee MHC Class I Molecules

van Deutekom, H. W. M., Hoof, I., Bontrop, R. E., Kesmir, C.

Journal:

The Journal of Immunology

Year:

2011

Language:

english

File:

PDF, 1.01 MB

english, 2011

42

A Coevolutionary Arms Race between Hosts and Viruses Drives Polymorphism and Polygenicity of NK Cell Receptors

Carrillo-Bustamante, Paola, Keşmir, Can, de Boer, Rob J.

Journal:

Molecular Biology and Evolution

Year:

2015

Language:

english

File:

PDF, 504 KB

english, 2015

43

HLA-B molecules target more conserved regions of the HIV-1 proteome

Fontaine Costa, Ana I, Rao, Xiangyu, LeChenadec, Emmanuelle, van Baarle, Debbie, Keşmir, Can

Journal:

Year:

2010

Language:

english

File:

PDF, 296 KB

english, 2010

44

Systemic inflammation in childhood obesity: circulating inflammatory mediators and activated CD14++monocytes

Schipper, H. S., Nuboer, R., Prop, S., Ham, H. J., Boer, F. K., Kesmir, Ã., Mombers, I. M. H., Bekkum, K. A., Woudstra, J., Kieft, J. H., Hoefer, I. E., Jager, W., Prakken, B., Summeren, M., Kalkhove

Journal:

Year:

2012

Language:

english

File:

PDF, 436 KB

english, 2012

45

Humans with chimpanzee-like major histocompatibility complex-specificities control HIV-1 infection

Hoof, Ilka, Keşmir, Can, Lund, Ole, Nielsen, Morten

Journal:

Year:

2008

Language:

english

File:

PDF, 115 KB

english, 2008

46

Discriminating self from nonself with short peptides from large proteomes

Nigel J. Burroughs, Rob J. de Boer, Can Keşmir

Journal:

Year:

2004

Language:

english

File:

PDF, 176 KB

english, 2004

47

Zooming into the binding groove of HLA molecules: which positions and which substitutions change peptide binding most?

van Deutekom, Hanneke W. M., Keşmir, Can

Journal:

Year:

2015

Language:

english

File:

PDF, 694 KB

english, 2015

48

Specificity of inhibitory KIRs enables NK cells to detect changes in an altered peptide environment

Carrillo-Bustamante, Paola, de Boer, Rob J., Keşmir, Can

Journal:

Year:

2017

Language:

english

File:

PDF, 822 KB

english, 2017

49

Clonal Exhaustion as a Result of Immune Deviation

Can Keşmir, Rob J De Boer

Journal:

Bulletin of Mathematical Biology

Year:

2003

Language:

english

File:

PDF, 178 KB

english, 2003

50

CD8+ TCR Repertoire Formation Is Guided Primarily by the Peptide Component of the Antigenic Complex

Koning, D., Costa, A. I., Hoof, I., Miles, J. J., Nanlohy, N. M., Ladell, K., Matthews, K. K., Venturi, V., Schellens, I. M. M., Borghans, J. A. M., Kesmir, C., Price, D. A., van Baarle, D.

Journal:

The Journal of Immunology

Year:

2013

Language:

english

File:

PDF, 1.42 MB

english, 2013

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